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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009130776.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 573aa MW: 64928.1 Da PI: 6.5883 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 89.3 | 4.3e-28 | 117 | 202 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+p W+evs+ m +e g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea XP_009130776.1 117 RWPRQETLTLLEIRSRLDHKFKEANQKGPFWDEVSRIMsEEYGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 202 8*************************************8889****************************98..55667*******85 PP | |||||||
2 | trihelix | 60.2 | 5e-19 | 407 | 492 | 1 | 82 |
trihelix 1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +W +qe+ +L+e+r++m++++++ +++++ lWeevs+k+ + gf ++s+ Ckekwe +++ ++k+k++ +k+++++ss+c + XP_009130776.1 407 CWNEQEIIKLMEIRTSMDTAFQEilgECSDEFLWEEVSAKLIQLGFdHKSALSCKEKWECISNGMRKEKKQISKKRKDNSSSCGVY 492 7*********************977679******************889**********************999999999999655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.11 | 114 | 177 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.934 | 116 | 175 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.2E-19 | 117 | 203 | No hit | No description |
CDD | cd12203 | 4.18E-18 | 117 | 182 | No hit | No description |
SMART | SM00717 | 4.4 | 404 | 470 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 8.0E-12 | 406 | 492 | No hit | No description |
CDD | cd12203 | 4.01E-14 | 406 | 475 | No hit | No description |
PROSITE profile | PS50090 | 5.901 | 408 | 468 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MEDHHTQYGI PELRQLMKGE GRTTTTASPS TSHFPSDFFG FNLAPAAPPP PPQHHRLHQF 60 TINQEMGFLP HGIHGLGGGS STAGNNSNLN MSTSGGGVGF SGFLDGGGLG GSGGTGRWPR 120 QETLTLLEIR SRLDHKFKEA NQKGPFWDEV SRIMSEEYGY QRSGKKCREK FENLYKYYKK 180 TKEGKAGRQD GKHYRFFRQL EALYGDSNNL VSFPNHNTQF MSHALGFHTQ NAMNITATTS 240 NIHDVDSAHG LLHHQSLSIS NNYNSSELEL MTSSSEGNDS DSRRKKRSWK AKIKEFIDVN 300 MKRLIERQDI WLEKLTKVIE DKEEQRMMKE EEWRKSEAAR VEQVHLFWAK ERERMEARDV 360 AVLEALQYLA GKTLIKPSCS SPEERINGNN EIQNNSENVS LEGSGSCWNE QEIIKLMEIR 420 TSMDTAFQEI LGECSDEFLW EEVSAKLIQL GFDHKSALSC KEKWECISNG MRKEKKQISK 480 KRKDNSSSCG VYYPRTEENA IYNNQESGYD DNDQHHHQMN EQDNVVSSTS NAAAGDLRGA 540 MAASTNCFPF VMGDGDQNLW ESYSLRLSKG ENQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232522 | 0.0 | AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130776.1 | 0.0 | PREDICTED: trihelix transcription factor PTL-like | ||||
Swissprot | Q9LZS0 | 0.0 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | M4CNI9 | 0.0 | M4CNI9_BRARP; Uncharacterized protein | ||||
STRING | Bra005777.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2767 | 28 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 0.0 | Trihelix family protein |